Research director at the CNRS and exploiter team leader. Theoretical evolutionary ecologist specialised in the study of the interactions between humans populations and microbes, especially HIV, human papillomaviruses, or SARS-Cov-2, but also the vaginal microbiota.
Post-doctoral fellow from ANRS-MIE on modelling HPV and vaginal microbiota.
PhD candidate funded by dim1health on machine learning in phylodynamics (co-supervisor: Laurent Jacob).
PhD candidate funded by the PSL biology doctoral school on vaginal microbiota metagenomics (co-supervisor: Laurent Jacob).
PhD candidate funded by the CNRS on HPV dynamics and evolution across scales (co-supervisor: Antoine Gross).
ANRS biostatistics engineeer cosupervised by Anne Thiébaut and Mircea T Sofonea.
PhD candidate funded by Sidaction on modelling HIV transmission in France using phylodynamics approaches (co-advisor: Laurence Meyer)).
PhD candidate funded by the Sidaction on HIV virus load epidemiology and evolution (co-supervisor: Mircea T Sofonea).
Agroparistech internship on analysing high-dimensional clinical datasets (co-supervisor: Inayat Bhardwaj).
ATIP-Avenir-funded post-doctoral fellow (2012-2014) on virus evolutionary dynamics. Now a Senior Lecturer at the University of Edinburgh.
ERC-funded Post-doctoral fellow on papillomavirus ecology and evolution (2015-2018). Now Senior scientist at the Public Health Agency of Canada.
ERC-funded Post-doctoral fellow in biostatistics, genomics and epidemiology (2017-2019). Now senior post-doctoral fellow in Basel (Switzerland).
FRM post-doctoral research fellow working on vaginal microbiota dynamics (2021-2024). Now an Health Services Researcher at HIQA (Ireland).
Post-doctoral researcher on the ANR CUPS2 project (2023-2024).
ANRS-MIE post-doctoral research fellow working on HPV immunology (2021-2024). Currently junior group leader in Montpellier.
ENS-funded PhD candidate (2014-2017) on modelling multiple infections and virulence evolution (co-supervisor: Yannis Michalakis). Now Assistant Professor at the University of Montpellier
Montpellier University-funded PhD candidate (2013-2017) in Viral phylodynamics (co-advisor: Olivier Gascuel). Now data scientist in in the private sector
Montpellier University-funded PhD candidate (2017-2020) working on analysing codon usage preference (co-supervisor: Nacho Bravo). Currently research engineer at the Pasteur Institute (Paris)
FRM-funded PhD candidate (2017-2021) on phylodynamics of HIV and coinfecting viruses (co-supervisor: Marc Choisy). Currently a post-doctoral fellow at IBENS Paris
FHU-funded PhD candidate (2020-2023) on vaginal microbiota and viral infections (co-supervisors: Vincent Foulongne and Nicolas Tessandier). Currently advisor in the private sector
Montpellier University-funded PhD candidate (2020-2023) working on modelling memory effects in epidemiology (co-supervisors: Christian Selinger and Mircea Sofonea). Currently a post-doctoral fellow in Montpellier
LcC-funded PhD candidate (2019-2023) on modelling virus stochastic dynamics (co-supervisors: Mircea Sofonea and Christian Selinger). Currently a post-doctoral fellow at IAME in Paris
ENS-Cahan-funded PhD candidate working on HPV ecology and evolution (co-supervisors: Nacho Bravo and Vincent Foulongne). Currently post-doctoral fellow at the University of Zürich
ANRS-MIE-funded PhD candidate on modeling herpesvirus seroepidemiology in France (co-supervisors: Mircea T Sofonea and Sonia Burrel). Currently an ARC post-doctoral fellow at the CRESS in Paris
MSc Student at ETH (2009) on modelling epidemics on networks (co-supervisor: Sebastian Bonhoeffer).
MEME MSc Student (2011-2012) on sex heterogeneity and the evolution of virulence.
MEME MSc Student (2011-2012) on the project modelling the evolution of resistance and tolerance (co-supervisor: Yannis Michalakis).
Chateaubriand fellowship (2011) on epidemiological modelling of plant pathogens (supervisor: Janic Antonovics).
MSA MSc Student (2012) on linking epidemiology and phylogenetics (co-supervisor: Olivier Gascuel).
MEME MSc Student (2014-2015) on modelling the evolution of drug resistance in HIV at the within- and between-host levels.
MEME MSc Student (2014) on the coevolution of immunosuppression and virulence.
MEME MSc Student (2015) on modelling ebola virus virulence evolution (co-supervisor: Mircea Sofonea).
MEME MSc Student (2015) on modelling virulence evolution in a heterogeneous environment (co-supervisor: Sébastien Lion).
BCD MSc student (2016) working on viral phylodynamics and the PANGEA contest (co-supervisor : Emma Saulnier).
MEME MSc student (2016) working on bioinformatics and virus genomics (co-supervisor : Nacho Bravo).
MEME MSc student (2016) working on modelling virulence evolution (co-supervisor : Mircea Sofonea).
MEME MSc student (2017) working on HPV diversity evolution (co-supervisor : Carmen Lía Murall).
B2E MSc student (2018) working on HPV epidemiology (co-supervisor: Nacho Bravo).
MODE MSc1 student (2019) on modelling coinfections and drug resistance (co-supervisors: Mircea Sofonea and Ramsès Djidjou-Demasse).
MD and Biology & Health MSc1 student (2019) on HPV infections in young women.
Physics and engineering of life MSc1 student (2019) on epidemics on networks (co-supervisor: Christian Selinger).
MDV MSc2 student (2019) on modelling HPV within-cell dynamics (co-supervisors: Mircea Sofonea and Christian Selinger).
Undergrad student (2019) on phylodynamics (co-supervisor: Gonché Danesh).
MEME MSc1 student (2020) working on modelling the evolution of the asymptomatic period.
EBE MSc2 (2020) working on memory effects in epidemiology (co-supervisor: Christian Selinger).
Intern from Télécom Paris (2021) working on analysing COVID-19 time series (co-supervisor: Christian Selinger).
Intern from ENS Cachan (2021) on PAPCLEAR clinical data analyses (co-supervisor: Nicolas Tessandier).
M1 internship from Lille University (2022) on phylodynamics and the PANGEA contest (co-supervisor: Gonché Danesh).
IMaLiS MSc internship (2023) on HPV within-host evolution (co-supervisor: Gonché Danesh).
MVA MSc internship (2023) on phylodynamics (main supervisor: Laurent Jacob).
ISPED MSc internship (2023) on COVID-19 epidemic waves analysis (co-supervisor: Olivier Supplisson).
Last year intership from IPSA (2023) working on modeling HPV infections.
IMaLiS MSc2 internship (2024) on vaginal microbiota metagenomics.
ENS biology internship (2024) on experimental immersion on HPV and vaginal microbiota modelling.
MPCI L3 internship from AMU (2024) on simuating phylogenies of infections.
MSc2 internship from ENS-Lyon biology master (2025) on analysing HIV genomics data.
ENS biology internship (2025) in experimental immersion on stochastic modelling of HPV dynamics.
MSc2 internship from ENS-Saclay (2025) on HPV and vaginal microbiota within-host evolution.
ENSAE intership (2025) to develop an epidemiology dashboard (main supervisor: Olivier Supplisson).
MSc1 intern from the BCM master (2025) working on the EPIDEMAP project (co-supervisors : Mircea T Sofonea et Olivier Thomine.
Clinical Research Associate (CRA) on the CUPS2 project (2025). Now a tenured CRA in the private sector for the Téléthon.
Engineer in biology working on the EVOLPROOF project (2018-2023).
Engineer in data science working on modelling, bioinformatics, and software development for COVID-19 (2020-2021). Now a PhD in Toulouse.
Engineer on the EVOLPROOF project (2017-2018). Now a CNRS engineer at the IGF in Montpellier.
Technician in biology (2017-2018) on the EVOLPROOF project. Now working at ID.vet.
CNRS engineer in immunology and clinical researcher (2014-2020). Now working at CNRS.
Computer scientist (2016) working on the EVOLPROOF project. Now working at GFI.
TEC on the project EVOLPROOF (2018-2020). Now working at CHU Montpellier.
TRC on the project EVOLPROOF (2018-2020). Now working at CHU Montpellier.
Research engineer in computer sciences on the PEPS project (2012). Now at the CNRS in Strasbourg at the IGBMC.
